Bioinformatics Main Page
Gene prediction, Plant promoter finding
PlantProm: Plant Promoters database
Arabidopsis genome analysis: genes, promoters, proteins
Prokaryotic promoter prediction demo
Escherichia coli
promoter map
Department of Computer Science
Computer Learning Research Centre
Royal Holloway, University of London
Useful links
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Gene Finding: Gene models construction, finding the best ORF, promoter prediction

Write sequence name/identifier for the sequence:

Paste nucleotide sequence here in fasta format):

Alternatively: load a local file with sequence in Fasta format.

Choose search method, closest organism and click Perform search:

FGENESB / Prediction coding genes in metagenomic bacterial sequences (both chains) [Help]
PROMB / Prediction bacterial promoters [Help]
Organism: Human Mouse Drosophila C.elegans Yeast (S.c.) Dicots (Arabidopsis) Monocots (Corn, Rice, Wheat, Barley) Schizosaccharomyces pombe Neurospora crassa
FGENESH / HMM based (select any organism from the above list)
Gene structure prediction (multiple genes, both chains) [H]
BESTORF - Finding potential coding fragment EST/mRNA (select organism above) [H]
TSSP-TCM / search for promoters in plant sequences [H]