Bioinformatics Main Page
Gene prediction, Plant promoter finding
PlantProm: Plant Promoters database
Arabidopsis genome analysis: genes, promoters, proteins
Prokaryotic promoter prediction demo
Escherichia coli
promoter map
Department of Computer Science
Computer Learning Research Centre
Royal Holloway, University of London
Useful links
People

 

 

Gene Finding: Gene models construction, Splice sites, Protein coding exons

Load a local file with sequence in Fasta format. Then select the program and perform search.

Local file name:

Alternatively: paste nucleotide sequence.

Choose search method, closest organism and click Perform search:

FGENESB /Prediction coding genes in bacterial metagenomic sequences (both chains) [Help]
PROMB / Prediction of bacterial promoters [Help]
Organism: Human Mouse Drosophila C.elegans Yeast (S.c.) Dicots (Arabidopsis) Monocots (Corn, Rice, Wheat, Barley) Schizosaccharomyces pombe Neurospora crassa
FGENESH / HMM based (select any organism from above list)
Gene structure prediction (multiple genes, both chains) [H] (Superfast variant provided for human only: 50-100 times faster)
BESTORF - Finding potential coding fragment EST/mRNA (Human/Drosophila/Plant (Dct)) [H]
TSSP_TCM - Prediction of Promoters in Plant sequences [H]